PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.197550.2
Common NameCsa_1G009580, LOC101213180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 562aa    MW: 60836.3 Da    PI: 7.1409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.197550.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30238297159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+rs +d +++++tYeg+Hnh+
  Cucsa.197550.2 238 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGApTCPVRKQVQRSVDDISILITTYEGTHNHP 297
                     58**************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30224299IPR003657WRKY domain
SuperFamilySSF1182901.03E-26231299IPR003657WRKY domain
PROSITE profilePS5081128.357233299IPR003657WRKY domain
SMARTSM007741.4E-35238298IPR003657WRKY domain
PfamPF031062.0E-26239297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEAQQALATI DDDRVQSTGE GDDKQASPNP KQHIHLKDDE QRHEERMKRT KVEMREVKEE  60
NERLKKYLDE IMKDYETLKR KFHEIKNNHD DQIREEGKKS TQTSGSTINN NNNDNDDDHQ  120
VEAEVDDMVS LRLGSRFSTH HQNKNTSSSS LSLTNKILDL KQDYVIQTPS TIDHSIHSPT  180
HSEPKDQEEA GQTTWPPSKM PKPGGLPSPA TGEDEVSQQS PPKKARVCVR ARCDTPTMND  240
GCQWRKYGQK IAKGNPCPRA YYRCTGAPTC PVRKQVQRSV DDISILITTY EGTHNHPLPV  300
SAMAMASTTS AAASMLLSGP SSSTSSQPGL NHSFTAPATA ANLHGMNMYL SNNTSSKQFY  360
LPNSSMLSSS LNHPTITLDL TSNPPSTSSS SPFHKIPLIN NNNYPPKYPF TNLDFASSQP  420
NFMSWNNNNN AYSNITKNNA IIGMGSDFAK QLPLHTNIYQ ACLQQLSKPS TTPQPPALPD  480
TIAAATKAIT SDPSFQSALA AALSSIIGGG ETGPSVSSLV VGGGGGGGQG SMGFEAAKSL  540
TCSTSKSTPS SSPGDSRDNG K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20225299174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660002.10.0PREDICTED: probable WRKY transcription factor 61 isoform X2
TrEMBLA0A0A0LRM60.0A0A0A0LRM6_CUCSA; Uncharacterized protein
STRINGGLYMA04G34220.21e-106(Glycine max)
STRINGGLYMA06G20300.11e-106(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-55WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]